STRINGSTRING
Bra004533 protein (Brassica rapa) - STRING interaction network
"Bra004533" - AT2G46505 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004533AT2G46505 (E=8e-043) SDH4 | SDH4; succinate dehydrogenase (ubiquinone) (137 aa)    
Predicted Functional Partners:
Bra036120
AT5G30510 (E=4e-200) RPS1, ARRPS1 | RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome (416 aa)
           
  0.501
Bra010018
AT5G30510 (E=2e-213) RPS1, ARRPS1 | RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome (416 aa)
           
  0.501
Bra031877
AT5G65165 (E=6e-164) SDH2-3 | SDH2-3; electron carrier/ succinate dehydrogenase ; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (306 aa)
           
  0.499
Bra033006
AT3G27380 (E=3e-147) SDH2-1 | SDH2-1; electron carrier/ succinate dehydrogenase ; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (281 aa)
           
  0.487
Bra025272
AT5G40650 (E=1e-146) SDH2-2 | SDH2-2; electron carrier/ succinate dehydrogenase ; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (281 aa)
           
  0.487
Bra010822
ATCG01110 (E=5e-030) NDHH | Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. (71 aa)
           
  0.418
Bra040955
AT1G47420 (E=2e-085) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, nucleus; EXPRESSED IN- 26 plant structures; EXPRESSED DURING- 15 growth stages; BEST Arabidopsis thaliana protein match is- GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase (TAIR-AT1G47260.1); Has 85 Blast hits to 85 proteins in 16 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (239 aa)
           
  0.410
Bra014079
AT1G47420 (E=2e-085) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, nucleus; EXPRESSED IN- 26 plant structures; EXPRESSED DURING- 15 growth stages; BEST Arabidopsis thaliana protein match is- GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase (TAIR-AT1G47260.1); Has 85 Blast hits to 85 proteins in 16 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (240 aa)
           
  0.410
Bra028468
AT5G40640 (E=1e-264) | unknown protein (586 aa)
           
  0.406
Bra015657
AT1G77750 (E=3e-079) | 30S ribosomal protein S13, chloroplast, putative (154 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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