STRINGSTRING
Bra004534 protein (Brassica rapa) - STRING interaction network
"Bra004534" - AT2G46490 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004534AT2G46490 (E=6e-040) | unknown protein (130 aa)    
Predicted Functional Partners:
Bra013527
AT4G21445 (E=2e-066) | unknown protein (155 aa)
           
  0.537
Bra034276
AT4G32850 (E=3e-297) nPAP | nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (771 aa)
           
  0.536
Bra039812
AT3G53710 (E=4e-195) AGD6 | AGD6; ARF GTPase activator/ DNA binding / zinc ion binding (451 aa)
           
  0.504
Bra031010
AT1G17980 (E=4e-290) | nucleotidyltransferase family protein (689 aa)
           
  0.501
Bra020169
AT3G44110 (E=6e-192) ATJ3, ATJ | ATJ3; protein binding (423 aa)
           
  0.476
Bra002386
AT3G44110 (E=7e-202) ATJ3, ATJ | ATJ3; protein binding (422 aa)
           
  0.447
Bra002385
AT3G44110 (E=9e-202) ATJ3, ATJ | ATJ3; protein binding (422 aa)
           
  0.447
Bra029588
AT3G06560 (E=3e-235) | polynucleotide adenylyltransferase/ protein binding (514 aa)
           
  0.418
Bra000005
AT2G37550 (E=2e-159) ASP1, AGD7 | AGD7; ARF GTPase activator/ DNA binding / zinc ion binding (477 aa)
           
  0.414
Bra007020
AT3G53710 (E=7e-178) AGD6 | AGD6; ARF GTPase activator/ DNA binding / zinc ion binding (454 aa)
           
  0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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