STRINGSTRING
Bra004541 protein (Brassica rapa) - STRING interaction network
"Bra004541" - AT3G61670 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004541AT3G61670 (E=2e-129) | unknown protein (671 aa)    
Predicted Functional Partners:
Bra038084
AT4G15420 (E=3e-280) | PRLI-interacting factor K (560 aa)
           
  0.489
Bra039839
AT2G15430 (E=5e-166) RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization (321 aa)
           
  0.426
Bra038065
AT4G15790 (E=5e-052) | unknown protein (147 aa)
           
  0.426
Bra035656
AT2G29020 (E=1e-063) | Rab5-interacting family protein (132 aa)
           
  0.426
Bra033548
AT1G54350 (E=7e-271) | ABC transporter family protein (693 aa)
           
  0.426
Bra033514
AT4G15790 (E=5e-056) | unknown protein (148 aa)
           
  0.426
Bra028387
AT2G29020 (E=9e-065) | Rab5-interacting family protein (133 aa)
           
  0.426
Bra027190
AT3G16120 (E=3e-045) | dynein light chain, putative (93 aa)
           
  0.426
Bra020049
AT5G19570 (E=2e-047) | unknown protein (143 aa)
           
  0.426
Bra015218
AT2G15430 (E=1e-167) RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization (319 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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