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Bra004545 protein (Brassica rapa) - STRING interaction network
"Bra004545" - AT2G46340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004545AT2G46340 (E=0.0) SPA1 | SPA1 (SUPPRESSOR OF PHYA-105 1); protein binding / signal transducer (1010 aa)    
Predicted Functional Partners:
Bra037880
AT4G08920 (E=0.0) CRY1, BLU1, HY4, OOP2, ATCRY1 | CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase (680 aa)
       
  0.994
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
     
0.987
Bra030568
AT1G04400 (E=1e-313) CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization (619 aa)
       
  0.970
Bra008976
AT5G11260 (E=6e-048) HY5, TED 5 | HY5 (ELONGATED HYPOCOTYL 5); DNA binding / double-stranded DNA binding / transcription factor (164 aa)
       
  0.967
CRY2a
AT1G04400 (E=6e-300) CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization (577 aa)
       
  0.950
Bra022192
AT4G16250 (E=0.0) PHYD | PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ red or far-red light photoreceptor/ signal transducer (1192 aa)
       
 
  0.943
Bra033315
AT1G02340 (E=7e-076) HFR1, RSF1, FBI1, REP1 | HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / protein binding / transcription factor (234 aa)
       
 
  0.943
Bra026485
AT5G23730 (E=3e-107) | nucleotide binding (198 aa)
         
0.854
Bra037755
AT5G63860 (E=4e-170) UVR8 | UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (416 aa)
       
  0.804
Bra029198
AT5G63860 (E=6e-165) UVR8 | UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (412 aa)
       
  0.804
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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