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Bra004550 protein (Brassica rapa) - STRING interaction network
"Bra004550" - AT2G46270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004550AT2G46270 (E=5e-143) GBF3 | GBF3 (G-BOX BINDING FACTOR 3); sequence-specific DNA binding / transcription factor (379 aa)    
Predicted Functional Partners:
Bra019694
AT1G13980 (E=0.0) GN, VAN7, EMB30 | GN (GNOM); GTP-GDP antiporter/ protein homodimerization (1448 aa)
       
      0.881
Bra023243
AT1G32150 (E=2e-070) | bZIP transcription factor family protein (352 aa)
       
 
0.616
Bra005335
AT2G35530 (E=3e-149) | bZIP transcription factor family protein (422 aa)
       
 
0.615
Bra040986
AT5G39500 (E=0.0) | pattern formation protein, putative (1433 aa)
       
      0.612
Bra028434
AT5G39500 (E=0.0) | pattern formation protein, putative (1675 aa)
       
      0.612
Bra002249
AT5G19610 (E=0.0) | sec7 domain-containing protein (1373 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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