STRINGSTRING
Bra004554 protein (Brassica rapa) - STRING interaction network
"Bra004554" - AT2G46230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004554AT2G46230 (E=1e-101) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF652 (InterPro-IPR006984), Nucleotide binding protein, PINc (InterPro-IPR006596); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G26530.1); Has 493 Blast hits to 493 proteins in 165 species- Archae - 21; Bacteria - 0; Metazoa - 192; Fungi - 143; Plants - 53; Viruses - 0; Other Eukaryotes - 84 ( [...] (196 aa)    
Predicted Functional Partners:
Bra028656
AT5G08420 (E=6e-116) | RNA binding ; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (386 aa)
     
    0.974
Bra005702
AT5G08420 (E=3e-056) | RNA binding (209 aa)
     
    0.969
Bra031535
AT1G06720 (E=0.0) | INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 7944 Blast hits to 5342 proteins in 373 species- Archae - 33; Bacteria - 667; Metazoa - 2609; Fungi - 1045; Plants - 414; Viruses - 80; Other Eukaryotes - 3096 (source- NCBI BLink). (1667 aa)
     
 
  0.889
Bra015522
AT1G06720 (E=0.0) | INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 7944 Blast hits to 5342 proteins in 373 species- Archae - 33; Bacteria - 667; Metazoa - 2609; Fungi - 1045; Plants - 414; Viruses - 80; Other Eukaryotes - 3096 (source- NCBI BLink). (1160 aa)
     
 
  0.889
Bra014494
AT3G60360 (E=8e-099) EDA14, UTP11 | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) ; Involved in nucleolar processing of pre-18S ribosomal RNA (228 aa)
     
 
    0.887
Bra007528
AT3G60360 (E=1e-098) EDA14, UTP11 | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) ; Involved in nucleolar processing of pre-18S ribosomal RNA (228 aa)
     
 
    0.887
Bra029585
AT3G06530 (E=0.0) | binding (2208 aa)
     
    0.883
Bra001203
AT3G06530 (E=0.0) | binding (2402 aa)
     
    0.883
Bra037103
AT3G13230 (E=3e-078) | RNA binding (233 aa)
     
    0.877
Bra034696
AT3G13230 (E=1e-109) | RNA binding (281 aa)
     
    0.877
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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