STRINGSTRING
Bra004555 protein (Brassica rapa) - STRING interaction network
"Bra004555" - AT2G46225 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004555AT2G46225 (E=2e-134) ABIL1 | ABIL1 (Abi-1-like 1) (303 aa)    
Predicted Functional Partners:
Bra005368
AT2G35110 (E=0.0) GRL, NAP1, NAPP | GRL (GNARLED); transcription activator (1399 aa)
       
 
  0.645
Bra005107
AT2G38440 (E=0.0) ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR2 (SCAR HOMOLOG 2) (1428 aa)
       
 
  0.642
Bra010847
AT1G29170 (E=7e-315) WAVE2, ATSCAR3, SCAR3 | WAVE2 (960 aa)
       
 
  0.523
Bra008405
AT1G79260 (E=8e-078) | unknown protein (158 aa)
           
  0.450
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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