STRINGSTRING
Bra004556 protein (Brassica rapa) - STRING interaction network
"Bra004556" - AT2G46220 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004556AT2G46220 (E=4e-107) | unknown protein (237 aa)    
Predicted Functional Partners:
Bra037042
AT4G32770 (E=1e-260) VTE1, ATSDX1 | VTE1 (VITAMIN E DEFICIENT 1); tocopherol cyclase (490 aa)
   
        0.479
Bra032879
AT1G28150 (E=1e-038) | unknown protein (128 aa)
   
          0.467
Bra015733
AT1G76560 (E=4e-050) CP12-3 | CP12-3 (135 aa)
   
          0.431
Bra014946
AT3G23400 (E=6e-083) | plastid-lipid associated protein PAP / fibrillin family protein (277 aa)
   
          0.426
Bra030268
AT2G21960 (E=2e-141) | unknown protein (327 aa)
   
          0.400
Bra021330
AT1G54680 (E=2e-087) | unknown protein (274 aa)
   
          0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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