STRINGSTRING
Bra004559 protein (Brassica rapa) - STRING interaction network
"Bra004559" - AT5G56780 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004559AT5G56780 (E=5e-094) | unknown protein (452 aa)    
Predicted Functional Partners:
Bra032953
AT3G26790 (E=1e-125) FUS3 | FUS3 (FUSCA 3); DNA binding / transcription activator/ transcription factor (308 aa)
       
      0.622
Bra025229
AT3G26790 (E=1e-064) FUS3 | FUS3 (FUSCA 3); DNA binding / transcription activator/ transcription factor (272 aa)
       
      0.614
Bra007238
AT2G40510 (E=4e-037) | 40S ribosomal protein S26 (RPS26A) (134 aa)
           
  0.483
Bra003237
AT3G56340 (E=3e-033) | 40S ribosomal protein S26 (RPS26C) (284 aa)
           
  0.483
Bra000193
AT3G56340 (E=4e-034) | 40S ribosomal protein S26 (RPS26C) (129 aa)
           
  0.483
Bra014697
AT2G40510 (E=2e-036) | 40S ribosomal protein S26 (RPS26A) (153 aa)
           
  0.438
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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