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Bra004560 protein (Brassica rapa) - STRING interaction network
"Bra004560" - AT2G46210 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004560AT2G46210 (E=5e-261) | delta-8 sphingolipid desaturase, putative (449 aa)    
Predicted Functional Partners:
Bra019665
AT1G14290 (E=5e-143) SBH2 | SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase (261 aa)
     
   
  0.516
Bra032439
AT1G06080 (E=4e-176) ADS1 | ADS1 (DELTA 9 DESATURASE 1); oxidoreductase (303 aa)
     
   
  0.489
Bra032438
AT1G06090 (E=9e-163) | fatty acid desaturase family protein (300 aa)
     
   
  0.489
Bra032437
AT1G06090 (E=7e-159) | fatty acid desaturase family protein (300 aa)
     
   
  0.489
Bra030650
AT1G06360 (E=4e-137) | fatty acid desaturase family protein (299 aa)
     
   
  0.489
Bra030649
AT1G06360 (E=1e-136) | fatty acid desaturase family protein (301 aa)
     
   
  0.489
Bra030638
AT1G06090 (E=4e-155) | fatty acid desaturase family protein (300 aa)
     
   
  0.489
Bra027203
AT3G15850 (E=1e-181) FAD5, FADB, JB67, ADS3 | FAD5 (FATTY ACID DESATURASE 5); 16-0 monogalactosyldiacylglycerol desaturase/ oxidoreductase (374 aa)
     
   
  0.489
Bra027201
AT3G15870 (E=1e-095) | oxidoreductase (244 aa)
     
   
  0.489
Bra027096
AT3G15870 (E=7e-149) | oxidoreductase (354 aa)
     
   
  0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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