STRINGSTRING
Bra004567 protein (Brassica rapa) - STRING interaction network
"Bra004567" - AT2G40430 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004567AT2G40430 (E=6e-072) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Tumor suppressor protein Gltscr2 (InterPro-IPR011211), P60-like (InterPro-IPR011687); Has 601 Blast hits to 544 proteins in 148 species- Archae - 0; Bacteria - 22; Metazoa - 201; Fungi - 103; Plants - 32; Viruses - 0; Other Eukaryotes - 243 (source- NCBI BLink). (383 aa)    
Predicted Functional Partners:
Bra019144
AT4G25730 (E=2e-266) | FtsJ-like methyltransferase family protein ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (818 aa)
     
      0.987
Bra010451
AT4G25730 (E=3e-229) | FtsJ-like methyltransferase family protein (765 aa)
     
      0.987
Bra008798
AT5G13830 (E=1e-110) | FtsJ-like methyltransferase family protein (227 aa)
     
      0.987
Bra028783
AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein (219 aa)
     
      0.984
Bra009440
AT5G04600 (E=2e-088) | RNA recognition motif (RRM)-containing protein (223 aa)
     
      0.984
Bra023878
AT1G23280 (E=4e-015) | MAK16 protein-related (96 aa)
     
   
  0.980
Bra023781
AT1G23280 (E=2e-063) | MAK16 protein-related (286 aa)
     
   
  0.980
Bra007931
AT1G23280 (E=5e-083) | MAK16 protein-related (302 aa)
     
   
  0.980
Bra003949
AT1G23280 (E=6e-097) | MAK16 protein-related (305 aa)
     
   
  0.980
Bra001895
AT1G23280 (E=2e-092) | MAK16 protein-related (297 aa)
     
   
  0.980
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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