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Bra004574 protein (Brassica rapa) - STRING interaction network
"Bra004574" - AT2G40490 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004574AT2G40490 (E=5e-132) HEME2 | HEME2; uroporphyrinogen decarboxylase (263 aa)    
Predicted Functional Partners:
Bra028666
AT5G08280 (E=1e-194) HEMC | HEMC (HYDROXYMETHYLBILANE SYNTHASE); hydroxymethylbilane synthase (380 aa)
 
  0.909
Bra009334
AT5G08280 (E=1e-199) HEMC | HEMC (HYDROXYMETHYLBILANE SYNTHASE); hydroxymethylbilane synthase (382 aa)
 
  0.909
Bra005980
AT5G08280 (E=1e-188) HEMC | HEMC (HYDROXYMETHYLBILANE SYNTHASE); hydroxymethylbilane synthase (379 aa)
 
  0.909
Bra033402
AT1G03475 (E=4e-203) LIN2, HEMF1, ATCPO-I | LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase (389 aa)
   
 
  0.896
Bra032550
AT1G03475 (E=4e-200) LIN2, HEMF1, ATCPO-I | LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase (386 aa)
   
 
  0.896
Bra009876
AT5G26030 (E=2e-221) FC1, FC-I, ATFC-I | FC1 (ferrochelatase 1); ferrochelatase ; Catalyzes the ferrous insertion into protoporphyrin IX (459 aa)
 
   
  0.856
Bra007748
AT2G30390 (E=2e-216) FC2, FC-II, ATFC-II | FC2 (FERROCHELATASE 2); ferrochelatase ; Catalyzes the ferrous insertion into protoporphyrin IX (495 aa)
 
   
  0.856
Bra036945
AT1G44318 (E=3e-119) hemb2 | hemb2; catalytic/ metal ion binding / porphobilinogen synthase (374 aa)
 
 
  0.844
Bra016270
AT1G69740 (E=4e-199) HEMB1 | HEMB1; catalytic/ metal ion binding / porphobilinogen synthase (426 aa)
 
 
  0.842
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
   
   
  0.830
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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