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Bra004584 protein (Brassica rapa) - STRING interaction network
"Bra004584" - AT2G40700 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004584AT2G40700 (E=8e-303) | DEAD/DEAH box helicase, putative (RH17) (614 aa)    
Predicted Functional Partners:
Bra003691
AT1G77030 (E=6e-286) | ATP binding / ATP-dependent helicase/ RNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding (852 aa)
   
 
0.990
Bra006421
AT1G80770 (E=2e-181) PDE318 | PDE318 (pigment defective 318); GTP binding (459 aa)
     
      0.989
Bra036641
AT3G16810 (E=3e-022) APUM24 | APUM24 (Arabidopsis Pumilio 24); RNA binding / binding (118 aa)
     
      0.987
Bra022180
AT3G16810 (E=1e-261) APUM24 | APUM24 (Arabidopsis Pumilio 24); RNA binding / binding (643 aa)
     
      0.987
Bra039628
AT2G18220 (E=4e-280) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised protein family UPF0120 (InterPro-IPR005343); BEST Arabidopsis thaliana protein match is- RBL (REBELOTE) (TAIR-AT3G55510.1); Has 4846 Blast hits to 3236 proteins in 249 species- Archae - 2; Bacteria - 127; Metazoa - 2049; Fungi - 594; Plants - 200; Viruses - 69; Other Eukaryotes - 1805 (source- NCBI BLink). (761 aa)
     
      0.985
Bra014738
AT3G55510 (E=3e-056) RBL | RBL (REBELOTE) (377 aa)
     
      0.985
Bra007171
AT3G55510 (E=3e-211) RBL | RBL (REBELOTE) (628 aa)
     
      0.985
Bra018437
AT1G10490 (E=0.0) | unknown protein (1024 aa)
     
      0.985
Bra007367
AT3G57940 (E=0.0) | unknown protein (1021 aa)
     
      0.985
Bra015344
AT1G04730 (E=0.0) | AAA-type ATPase family protein (1622 aa)
     
      0.978
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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