STRINGSTRING
Bra004587 protein (Brassica rapa) - STRING interaction network
"Bra004587" - AT2G40800 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004587AT2G40800 (E=1e-155) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- Mitochondrial import inner membrane translocase, subunit Tim21 (InterPro-IPR013261); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G56430.1); Has 21 Blast hits to 21 proteins in 6 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (361 aa)    
Predicted Functional Partners:
Bra025501
AT5G41390 (E=8e-086) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; CONTAINS InterPro DOMAIN/s- Protein of unknown function Cys-rich (InterPro-IPR006461); BEST Arabidopsis thaliana protein match is- proline-rich family protein (TAIR-AT1G63830.2); Has 12019 Blast hits to 5816 proteins in 448 species- Archae - 6; Bacteria - 1151; Metazoa - 4980; Fungi - 1500; Plants - 2605; Viruses - 338; Other Eukaryotes - 1439 (source- NCBI BLink). (283 aa)
           
  0.541
Bra019301
AT4G23470 (E=2e-112) | hydroxyproline-rich glycoprotein family protein (248 aa)
           
  0.541
Bra019274
AT4G23720 (E=4e-123) | unknown protein (316 aa)
           
  0.541
Bra013737
AT4G23860 (E=2e-131) | PHD finger protein-related (400 aa)
           
  0.541
Bra013698
AT4G23510 (E=3e-070) | disease resistance protein (TIR class), putative (652 aa)
           
  0.541
Bra013693
AT4G23470 (E=2e-103) | hydroxyproline-rich glycoprotein family protein (274 aa)
           
  0.541
Bra030405
AT1G51980 (E=7e-238) | mitochondrial processing peptidase alpha subunit, putative (504 aa)
     
   
  0.438
Bra040079
AT4G32470 (E=6e-061) | ubiquinol-cytochrome C reductase complex 14 kDa protein, putative ; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain (122 aa)
           
  0.416
Bra032991
AT3G27240 (E=1e-144) | cytochrome c1, putative (307 aa)
           
  0.416
Bra013766
AT4G24140 (E=6e-248) | hydrolase, alpha/beta fold family protein (496 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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