STRINGSTRING
Bra004588 protein (Brassica rapa) - STRING interaction network
"Bra004588" - AT2G40820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004588AT2G40820 (E=2e-229) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- myosin heavy chain-related (TAIR-AT3G56480.1); Has 2697 Blast hits to 2260 proteins in 261 species- Archae - 3; Bacteria - 96; Metazoa - 995; Fungi - 432; Plants - 786; Viruses - 39; Other Eukaryotes - 346 (source- NCBI BLink). (496 aa)    
Predicted Functional Partners:
Bra027177
AT3G16280 (E=5e-045) | DNA binding / transcription factor (240 aa)
           
  0.478
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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