STRINGSTRING
Bra004590 protein (Brassica rapa) - STRING interaction network
"Bra004590" - AT2G40840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004590AT2G40840 (E=0.0) DPE2 | DPE2 (DISPROPORTIONATING ENZYME 2); 4-alpha-glucanotransferase/ heteroglycan binding (941 aa)    
Predicted Functional Partners:
Bra012676
AT4G17090 (E=9e-316) CT-BMY, BAM3, BMY8 | CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase (548 aa)
         
  0.935
Bra004944
AT2G45880 (E=0.0) BMY4, BAM7 | BAM7 (BETA-AMYLASE 7); beta-amylase/ catalytic/ cation binding (672 aa)
         
  0.935
Bra026230
AT4G17090 (E=5e-302) CT-BMY, BAM3, BMY8 | CT-BMY (CHLOROPLAST BETA-AMYLASE); beta-amylase (549 aa)
         
  0.933
Bra037799
AT5G64860 (E=3e-238) DPE1 | DPE1 (DISPROPORTIONATING ENZYME); 4-alpha-glucanotransferase/ catalytic/ cation binding (555 aa)
   
 
0.931
Bra035407
AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (927 aa)
   
 
  0.907
Bra006111
AT5G11720 (E=0.0) | alpha-glucosidase 1 (AGLU1) (891 aa)
   
 
  0.907
Bra004319
AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (926 aa)
   
 
  0.907
Bra004031
AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (924 aa)
   
 
  0.907
Bra037344
AT4G00490 (E=6e-272) BAM2, BMY9 | BAM2 (BETA-AMYLASE 2); beta-amylase (541 aa)
         
  0.904
Bra015025
AT3G23920 (E=5e-298) BAM1, BMY7, TR-BAMY | BAM1 (BETA-AMYLASE 1); beta-amylase (570 aa)
         
  0.902
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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