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Bra004597 protein (Brassica rapa) - STRING interaction network
"Bra004597" - AT2G41070 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004597AT2G41070 (E=1e-095) EEL, ATBZIP12, DPBF4 | EEL (ENHANCED EM LEVEL); DNA binding / transcription factor (281 aa)    
Predicted Functional Partners:
Bra029160
AT5G51760 (E=2e-176) AHG1 | AHG1 (ABA-hypersensitive germination 1); catalytic/ protein serine/threonine phosphatase (418 aa)
       
      0.978
Bra034845
AT3G11410 (E=8e-152) ATPP2CA, AHG3, PP2CA | PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein serine/threonine phosphatase (399 aa)
       
      0.952
Bra002038
AT3G11410 (E=9e-152) ATPP2CA, AHG3, PP2CA | PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein serine/threonine phosphatase (380 aa)
       
      0.952
Bra031574
AT1G07430 (E=1e-184) | protein phosphatase 2C, putative / PP2C, putative (436 aa)
       
      0.896
Bra018398
AT2G29380 (E=4e-144) | protein phosphatase 2C, putative / PP2C, putative (366 aa)
       
      0.896
Bra015579
AT1G07430 (E=3e-153) | protein phosphatase 2C, putative / PP2C, putative (426 aa)
       
      0.896
Bra002594
AT5G59220 (E=5e-154) | protein phosphatase 2C, putative / PP2C, putative (412 aa)
       
      0.896
Bra011481
AT4G33950 (E=3e-191) OST1, SNRK2-6, SRK2E, SNRK2.6, P44 | OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase (362 aa)
       
    0.722
Bra017615
AT4G33950 (E=6e-188) OST1, SNRK2-6, SRK2E, SNRK2.6, P44 | OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase (362 aa)
       
    0.668
Bra005287
AT2G36270 (E=5e-133) ABI5, GIA1 | ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor (438 aa)
       
 
0.655
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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