STRINGSTRING
Bra004602 protein (Brassica rapa) - STRING interaction network
"Bra004602" - AT2G41160 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004602AT2G41160 (E=3e-114) | ubiquitin-associated (UBA)/TS-N domain-containing protein (290 aa)    
Predicted Functional Partners:
Bra040885
AT4G11740 (E=6e-191) SAY1 | SAY1 (555 aa)
       
 
  0.864
Bra035277
AT4G10790 (E=5e-123) | UBX domain-containing protein (455 aa)
       
 
  0.864
Bra033134
AT4G11740 (E=4e-119) SAY1 | SAY1 (475 aa)
       
 
  0.864
Bra000958
AT4G00752 (E=5e-174) | UBX domain-containing protein (458 aa)
       
 
  0.864
Bra000721
AT4G10790 (E=7e-155) | UBX domain-containing protein (479 aa)
       
 
  0.864
Bra036491
AT2G20650 (E=8e-283) | zinc finger (C3HC4-type RING finger) family protein (556 aa)
       
      0.857
Bra010370
AT4G28370 (E=1e-296) | protein binding / zinc ion binding (565 aa)
       
      0.857
Bra039949
AT3G22410 (E=2e-177) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cellular retinaldehyde-binding/triple function, C-terminal (InterPro-IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro-IPR011074); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G05370.1); Has 1032 Blast hits to 1032 proteins in 165 species- Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 243; Plants - 390; Viruses - 0; Other Eukaryotes - 154 (source- NCBI BLink). (401 aa)
       
 
  0.424
Bra035864
AT5G63060 (E=2e-062) | transporter (254 aa)
       
 
  0.424
Bra033247
AT1G01630 (E=3e-132) | SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (255 aa)
       
 
  0.424
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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