STRINGSTRING
Bra004609 protein (Brassica rapa) - STRING interaction network
"Bra004609" - AT2G41240 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004609AT2G41240 (E=2e-101) BHLH100 | BHLH100 (BASIC HELIX-LOOP-HELIX PROTEIN 100); DNA binding / transcription factor (243 aa)    
Predicted Functional Partners:
Bra022676
AT5G53850 (E=1e-263) | haloacid dehalogenase-like hydrolase family protein (501 aa)
           
  0.508
Bra003029
AT5G53850 (E=2e-132) | haloacid dehalogenase-like hydrolase family protein (519 aa)
           
  0.508
Bra019509
AT3G47640 (E=3e-090) | basic helix-loop-helix (bHLH) family protein (234 aa)
     
   
  0.500
Bra032640
AT1G01580 (E=0.0) FRO2, FRD1, ATFRO2 | FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase (725 aa)
           
  0.499
Bra013419
AT4G19690 (E=2e-159) IRT1 | IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (345 aa)
           
  0.475
Bra012534
AT4G19690 (E=5e-159) IRT1 | IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (345 aa)
           
  0.475
Bra038164
AT1G56430 (E=5e-166) ATNAS4, NAS4 | NAS4 (NICOTIANAMINE SYNTHASE 4); nicotianamine synthase (323 aa)
     
   
  0.464
Bra033788
AT3G47640 (E=5e-059) | basic helix-loop-helix (bHLH) family protein (439 aa)
     
   
  0.416
Bra022310
AT3G18290 (E=0.0) EMB2454 | EMB2454 (embryo defective 2454); protein binding / zinc ion binding (1244 aa)
     
   
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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