STRINGSTRING
Bra004623 protein (Brassica rapa) - STRING interaction network
"Bra004623" - AT2G41475 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004623AT2G41475 (E=7e-082) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; CONTAINS InterPro DOMAIN/s- Lipase/lipooxygenase, PLAT/LH2 (InterPro-IPR008976), Embryo-specific 3 (InterPro-IPR010417); BEST Arabidopsis thaliana protein match is- embryo-specific protein-related (TAIR-AT5G62200.1); Has 60 Blast hits to 60 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (177 aa)    
Predicted Functional Partners:
Bra017223
AT2G36810 (E=7e-265) | binding (1336 aa)
       
      0.890
Bra000115
AT2G39050 (E=6e-107) | hydroxyproline-rich glycoprotein family protein (326 aa)
       
 
  0.687
Bra035081
AT1G78990 (E=2e-229) | transferase family protein (457 aa)
           
  0.475
Bra003629
AT1G78990 (E=2e-231) | transferase family protein (455 aa)
           
  0.475
Bra004996
AT2G39980 (E=6e-221) | transferase family protein (479 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]