STRINGSTRING
Bra004625 protein (Brassica rapa) - STRING interaction network
"Bra004625" - AT2G41500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004625AT2G41500 (E=1e-209) LIS, EMB2776 | EMB2776; nucleotide binding (489 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.995
Bra030529
AT1G03330 (E=2e-047) | small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative (93 aa)
     
  0.987
Bra005605
AT2G32600 (E=2e-111) | hydroxyproline-rich glycoprotein family protein (276 aa)
     
  0.984
Bra034208
AT4G03430 (E=0.0) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (1015 aa)
     
  0.982
Bra031522
AT1G60170 (E=4e-222) emb1220 | emb1220 (embryo defective 1220) (486 aa)
     
  0.982
Bra028740
AT5G06160 (E=5e-217) ATO | ATO (ATROPOS); nucleic acid binding / zinc ion binding (506 aa)
     
  0.981
Bra005882
AT5G06160 (E=1e-212) ATO | ATO (ATROPOS); nucleic acid binding / zinc ion binding (512 aa)
     
  0.981
Bra000894
AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (999 aa)
     
  0.981
Bra032868
AT1G28060 (E=7e-136) | small nuclear ribonucleoprotein family protein / snRNP family protein (752 aa)
     
  0.979
Bra010907
AT1G28060 (E=2e-144) | small nuclear ribonucleoprotein family protein / snRNP family protein (791 aa)
     
  0.979
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]