STRINGSTRING
Bra004631.1-P protein (Brassica rapa) - STRING interaction network
"Bra004631.1-P" - AT2G04360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004631.1-PAT2G04360 (E=2e-139) | unknown protein (328 aa)    
Predicted Functional Partners:
Bra025213
AT3G26580 (E=2e-144) | INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Tetratricopeptide region (InterPro-IPR013026); Has 2147 Blast hits to 1154 proteins in 168 species- Archae - 2; Bacteria - 99; Metazoa - 1301; Fungi - 180; Plants - 105; Viruses - 57; Other Eukaryotes - 403 (source- NCBI BLink). (353 aa)
   
          0.493
Bra040413
AT3G04890 (E=6e-088) | unknown protein (218 aa)
   
          0.489
Bra037042
AT4G32770 (E=1e-260) VTE1, ATSDX1 | VTE1 (VITAMIN E DEFICIENT 1); tocopherol cyclase (490 aa)
   
          0.466
Bra039440
AT3G05410 (E=1e-089) | calcium ion binding (181 aa)
   
          0.464
Bra030810
AT1G56180 (E=2e-091) | unknown protein (409 aa)
   
        0.458
Bra010636
AT4G38100 (E=3e-064) | unknown protein (191 aa)
   
          0.441
Bra027235
AT3G15520 (E=9e-222) | peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase (468 aa)
   
        0.439
Bra003900
AT1G72030 (E=6e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (249 aa)
   
          0.424
Bra034541
AT4G32915 (E=5e-054) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of translational fidelity; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Glu-tRNAGln amidotransferase, C subunit (InterPro-IPR003837); Has 1227 Blast hits to 1227 proteins in 425 species- Archae - 17; Bacteria - 884; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 309 (source- NCBI BLink). (145 aa)
   
        0.414
Bra013761
AT4G24090 (E=1e-124) | unknown protein (314 aa)
   
        0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]