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Bra004643 protein (Brassica rapa) - STRING interaction network
"Bra004643" - AT4G30920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004643AT4G30920 (E=2e-027) | cytosol aminopeptidase family protein (328 aa)    
Predicted Functional Partners:
Bra013258
AT4G17830 (E=9e-228) | peptidase M20/M25/M40 family protein (432 aa)
   
 
  0.760
Bra012637
AT4G17830 (E=7e-228) | peptidase M20/M25/M40 family protein (437 aa)
   
 
  0.760
Bra034547
AT4G33090 (E=0.0) APM1, ATAPM1 | APM1 (AMINOPEPTIDASE M1); aminopeptidase (871 aa)
     
 
  0.751
Bra019433
AT1G63770 (E=0.0) | peptidase M1 family protein (888 aa)
     
 
  0.751
Bra018715
AT1G63770 (E=0.0) | peptidase M1 family protein (954 aa)
     
 
  0.751
Bra011412
AT4G33090 (E=0.0) APM1, ATAPM1 | APM1 (AMINOPEPTIDASE M1); aminopeptidase (873 aa)
     
 
  0.751
Bra033632
AT4G39640 (E=2e-255) GGT1 | GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase (581 aa)
         
  0.740
Bra033631
AT4G39640 (E=8e-241) GGT1 | GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase (567 aa)
         
  0.740
Bra024155
AT4G29210 (E=7e-068) GGT3, GGT4 | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase (407 aa)
         
  0.740
Bra024154
AT4G29210 (E=1e-149) GGT3, GGT4 | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase (557 aa)
         
  0.740
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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