STRINGSTRING
Bra004646 protein (Brassica rapa) - STRING interaction network
"Bra004646" - AT2G41740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004646AT2G41740 (E=0.0) VLN2, ATVLN2 | VLN2 (VILLIN 2); actin binding (973 aa)    
Predicted Functional Partners:
Bra028046
AT1G34260 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1442 aa)
         
  0.869
Bra021545
AT3G14270 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1774 aa)
         
  0.869
Bra016167
AT1G71010 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1541 aa)
         
  0.869
Bra011429
AT4G33240 (E=0.0) | 1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding (1719 aa)
         
  0.869
Bra007954
AT1G71010 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1539 aa)
         
  0.869
Bra001545
AT3G14270 (E=0.0) | phosphatidylinositol-4-phosphate 5-kinase family protein (1767 aa)
         
  0.869
Bra037560
AT3G18780 (E=2e-178) ACT2, DER1, LSR2, ENL2 | ACT2 (ACTIN 2); structural constituent of cytoskeleton (353 aa)
     
  0.777
Bra035607
AT5G56180 (E=2e-224) ATARP8, ARP8 | ATARP8 (ACTIN-RELATED PROTEIN 8); structural constituent of cytoskeleton (466 aa)
     
  0.777
Bra034778
AT3G12110 (E=5e-219) ACT11 | ACT11 (actin-11); structural constituent of cytoskeleton (377 aa)
     
  0.777
Bra033819
AT3G46520 (E=3e-218) ACT12 | ACT12 (ACTIN-12); structural constituent of cytoskeleton (377 aa)
     
  0.777
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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