STRINGSTRING
Bra004657 protein (Brassica rapa) - STRING interaction network
"Bra004657" - AT2G41870 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004657AT2G41870 (E=9e-084) | remorin family protein (270 aa)    
Predicted Functional Partners:
Bra028644
AT5G09225 (E=1e-020) | unknown protein (71 aa)
           
  0.549
Bra015122
AT3G25400 (E=4e-060) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 11 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro-IPR011394), EAR (InterPro-IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro-IPR004518); Has 572 Blast hits to 572 proteins in 181 species- Archae - 11; Bacteria - 286; Metazoa - 71; Fungi - 1; Plants - 31; Viruses - 0; Other Eukaryotes - 172 (source- NCBI BLink). (134 aa)
           
  0.495
Bra009003
AT5G10930 (E=1e-144) CIPK5, SnRK3.24 | CIPK5 (CBL-INTERACTING PROTEIN KINASE 5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (434 aa)
     
   
  0.426
Bra000116
AT2G39060 (E=1e-108) | nodulin MtN3 family protein (270 aa)
           
  0.418
Bra013272
AT4G17980 (E=6e-105) anac071 | anac071 (Arabidopsis NAC domain containing protein 71); transcription factor (292 aa)
           
  0.406
Bra012626
AT4G17980 (E=3e-118) anac071 | anac071 (Arabidopsis NAC domain containing protein 71); transcription factor (286 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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