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Bra004666 protein (Brassica rapa) - STRING interaction network
"Bra004666" - AT2G42030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004666AT2G42030 (E=2e-094) | zinc finger (C3HC4-type RING finger) family protein (380 aa)    
Predicted Functional Partners:
Bra029520
AT4G04860 (E=2e-127) DER2.2 | DER2.2 (DERLIN-2.2) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
     
  0.580
Bra020870
AT4G21810 (E=9e-127) DER2.1 | DER2.1 (DERLIN-2.1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
     
  0.580
Bra013563
AT4G21810 (E=5e-110) DER2.1 | DER2.1 (DERLIN-2.1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (284 aa)
     
  0.580
Bra011097
AT4G29330 (E=4e-109) DER1 | DER1 (DERLIN-1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (262 aa)
     
  0.580
Bra017383
AT2G03510 (E=2e-182) | band 7 family protein (361 aa)
       
  0.556
Bra037393
AT4G01000 (E=1e-117) | ubiquitin family protein (419 aa)
       
    0.539
Bra036232
AT4G05230 (E=3e-060) | ubiquitin family protein (201 aa)
       
    0.539
Bra036231
AT4G05230 (E=1e-013) | ubiquitin family protein (444 aa)
       
    0.539
Bra036230
AT4G03370 (E=5e-016) | ubiquitin family protein (538 aa)
       
    0.539
Bra034606
AT4G05230 (E=7e-079) | ubiquitin family protein (208 aa)
       
    0.539
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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