STRINGSTRING
Bra004668 protein (Brassica rapa) - STRING interaction network
"Bra004668" - AT2G42070 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004668AT2G42070 (E=3e-118) ATNUDT23, ATNUDX23 | ATNUDX23 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23); FAD diphosphatase/ hydrolase (267 aa)    
Predicted Functional Partners:
Bra037978
AT1G55090 (E=0.0) | carbon-nitrogen hydrolase family protein (742 aa)
       
  0.960
Bra030888
AT1G55090 (E=0.0) | carbon-nitrogen hydrolase family protein (736 aa)
       
  0.960
Bra029428
AT4G11980 (E=1e-133) ATNUDT14, ATNUDX14 | ATNUDX14 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14); ADP-glucose pyrophosphohydrolase/ ADP-ribose pyrophosphohydrolase/ ADP-sugar diphosphatase/ hydrolase (306 aa)
       
  0.912
Bra037645
AT2G44530 (E=6e-109) | ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative (414 aa)
       
  0.911
Bra023263
AT1G32380 (E=6e-204) | ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) (395 aa)
       
  0.911
Bra005344
AT2G35390 (E=2e-194) | ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI) (399 aa)
       
  0.911
Bra028835
AT5G03430 (E=1e-250) | phosphoadenosine phosphosulfate (PAPS) reductase family protein (503 aa)
       
    0.798
Bra009529
AT5G03430 (E=6e-256) | phosphoadenosine phosphosulfate (PAPS) reductase family protein (499 aa)
       
    0.798
Bra005764
AT5G03430 (E=6e-238) | phosphoadenosine phosphosulfate (PAPS) reductase family protein (522 aa)
       
    0.798
Bra028959
AT5G55810 (E=1e-114) AtNMNAT | AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase); nicotinamide-nucleotide adenylyltransferase/ nicotinate-nucleotide adenylyltransferase (238 aa)
       
  0.772
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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