STRINGSTRING
Bra004671 protein (Brassica rapa) - STRING interaction network
"Bra004671" - AT2G42130 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004671AT2G42130 (E=2e-117) | unknown protein (303 aa)    
Predicted Functional Partners:
Bra003601
AT1G79600 (E=0.0) | ABC1 family protein (1154 aa)
     
   
  0.479
Bra011268
AT4G31390 (E=0.0) | ABC1 family protein (600 aa)
           
  0.474
Bra025180
AT3G26070 (E=6e-119) | plastid-lipid associated protein PAP / fibrillin family protein (243 aa)
     
   
  0.471
Bra014946
AT3G23400 (E=6e-083) | plastid-lipid associated protein PAP / fibrillin family protein (277 aa)
     
   
  0.419
Bra018893
AT1G51110 (E=6e-186) | plastid-lipid associated protein PAP / fibrillin family protein (407 aa)
     
   
  0.419
Bra005337
AT2G35490 (E=2e-140) | plastid-lipid associated protein PAP, putative (360 aa)
     
   
  0.414
Bra029670
AT3G07700 (E=0.0) | ABC1 family protein (700 aa)
     
   
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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