STRINGSTRING
Bra004674 protein (Brassica rapa) - STRING interaction network
"Bra004674" - AT2G42200 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004674AT2G42200 (E=3e-136) SPL9 | SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor (369 aa)    
Predicted Functional Partners:
Bra035974
AT5G43320 (E=8e-249) ckl8 | ckl8 (Casein Kinase I-like 8); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (475 aa)
           
  0.544
Bra027528
AT5G44100 (E=2e-215) ckl7 | ckl7 (Casein Kinase I-like 7); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (478 aa)
           
  0.544
Bra023732
AT3G23340 (E=3e-217) ckl10 | ckl10 (Casein Kinase I-like 10); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (433 aa)
           
  0.544
Bra011038
AT4G28540 (E=7e-224) CKL6, PAPK1 | CKL6 (CASEIN KINASE I-LIKE 6); kinase/ protein serine/threonine kinase (481 aa)
           
  0.544
Bra010762
AT4G14340 (E=2e-201) CKI1, CKL11 | CKI1 (CASEIN KINASE I); kinase/ protein serine/threonine kinase (452 aa)
           
  0.544
Bra010361
AT4G28540 (E=8e-225) CKL6, PAPK1 | CKL6 (CASEIN KINASE I-LIKE 6); kinase/ protein serine/threonine kinase (478 aa)
           
  0.544
Bra034842
AT3G11440 (E=2e-184) ATMYB65, MYB65 | MYB65 (MYB DOMAIN PROTEIN 65); DNA binding / transcription factor (517 aa)
           
  0.501
Bra021791
AT2G32460 (E=9e-105) MYB101, ATMYB101, ATM1 | MYB101; DNA binding / transcription factor (388 aa)
           
  0.501
Bra002042
AT3G11440 (E=6e-101) ATMYB65, MYB65 | MYB65 (MYB DOMAIN PROTEIN 65); DNA binding / transcription factor (470 aa)
           
  0.501
Bra036721
AT2G19470 (E=6e-219) ckl5 | ckl5 (Casein Kinase I-like 5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (437 aa)
           
  0.468
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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