STRINGSTRING
Bra004680 protein (Brassica rapa) - STRING interaction network
"Bra004680" - AT2G42310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004680AT2G42310 (E=1e-056) | unknown protein (113 aa)    
Predicted Functional Partners:
Bra038640
AT5G63510 (E=5e-129) GAMMA CAL1 | GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1); carbonate dehydratase (252 aa)
     
 
  0.493
Bra035840
AT3G48680 (E=4e-126) GAMMA CAL2 | GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); transferase (261 aa)
     
 
  0.493
Bra018042
AT3G48680 (E=3e-135) GAMMA CAL2 | GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); transferase (256 aa)
     
 
  0.493
Bra037348
AT4G00585 (E=1e-038) | unknown protein (85 aa)
     
   
  0.483
Bra017857
AT4G00585 (E=2e-038) | unknown protein (87 aa)
     
   
  0.483
Bra000966
AT4G00585 (E=2e-038) | unknown protein (86 aa)
     
   
  0.483
Bra004256
AT1G67785 (E=1e-030) | unknown protein (63 aa)
     
   
  0.471
Bra004070
AT1G67785 (E=1e-029) | unknown protein (63 aa)
     
   
  0.471
Bra034003
Uncharacterized protein (91 aa)
     
   
  0.466
Bra004221
Uncharacterized protein (91 aa)
     
   
  0.466
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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