STRINGSTRING
Bra004689 protein (Brassica rapa) - STRING interaction network
"Bra004689" - AT2G42380 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004689AT2G42380 (E=7e-106) ATBZIP34, BZIP34 | bZIP transcription factor family protein (306 aa)    
Predicted Functional Partners:
Bra023085
AT2G36890 (E=3e-105) RAX2, MYB38, ATMYB38, BIT1 | RAX2 (REGULATOR OF AXILLARY MERISTEMS 2); DNA binding / transcription factor (289 aa)
           
  0.530
Bra017218
AT2G36890 (E=3e-115) RAX2, MYB38, ATMYB38, BIT1 | RAX2 (REGULATOR OF AXILLARY MERISTEMS 2); DNA binding / transcription factor (290 aa)
           
  0.530
Bra005234
AT2G36890 (E=7e-103) RAX2, MYB38, ATMYB38, BIT1 | RAX2 (REGULATOR OF AXILLARY MERISTEMS 2); DNA binding / transcription factor (288 aa)
           
  0.530
Bra032191
AT1G43700 (E=3e-114) VIP1 | VIP1 (VIRE2-INTERACTING PROTEIN 1); protein binding / transcription factor (330 aa)
       
   
0.495
Bra022280
AT3G18100 (E=1e-268) MYB4R1, AtMYB4R1 | MYB4R1 (myb domain protein 4R1); transcription factor (866 aa)
           
  0.463
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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