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Bra004690 protein (Brassica rapa) - STRING interaction network
"Bra004690" - AT2G42390 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004690AT2G42390 (E=5e-086) | protein kinase C substrate, heavy chain-related (217 aa)    
Predicted Functional Partners:
Bra024240
AT5G63840 (E=0.0) RSW3 | RSW3 (RADIAL SWELLING 3); glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (921 aa)
     
  0.992
Bra037754
AT5G63840 (E=0.0) RSW3 | RSW3 (RADIAL SWELLING 3); glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (841 aa)
     
  0.977
Bra028332
AT3G23640 (E=0.0) HGL1 | HGL1 (heteroglycan glucosidase 1); hydrolase, hydrolyzing O-glycosyl compounds (989 aa)
     
  0.977
Bra028330
AT3G23640 (E=1e-212) HGL1 | HGL1 (heteroglycan glucosidase 1); hydrolase, hydrolyzing O-glycosyl compounds (898 aa)
     
  0.977
Bra035407
AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (927 aa)
     
  0.936
Bra006111
AT5G11720 (E=0.0) | alpha-glucosidase 1 (AGLU1) (891 aa)
     
  0.936
Bra004319
AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (926 aa)
     
  0.936
Bra004031
AT1G68560 (E=0.0) ATXYL1, XYL1 | XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase (924 aa)
     
  0.936
Bra035913
AT5G61790 (E=5e-239) CNX1, ATCNX1 | calnexin 1 (CNX1) (535 aa)
     
  0.888
Bra029308
AT5G61790 (E=1e-203) CNX1, ATCNX1 | calnexin 1 (CNX1) (877 aa)
     
  0.888
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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