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Bra004692 protein (Brassica rapa) - STRING interaction network
"Bra004692" - AT2G42410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004692AT2G42410 (E=1e-088) ZFP11, ATZFP11 | ZFP11 (ZINC FINGER PROTEIN 11); nucleic acid binding / transcription factor/ zinc ion binding (211 aa)    
Predicted Functional Partners:
Bra025393
AT3G29340 (E=3e-024) | zinc finger (C2H2 type) family protein (323 aa)
           
  0.416
Bra008143
AT1G74250 (E=7e-138) | DNAJ heat shock N-terminal domain-containing protein (661 aa)
           
  0.416
Bra007545
AT3G60580 (E=8e-092) | zinc finger (C2H2 type) family protein (297 aa)
           
  0.416
Bra000372
AT2G45120 (E=8e-095) | zinc finger (C2H2 type) family protein (310 aa)
           
  0.416
Bra036591
AT5G26610 (E=2e-108) | D111/G-patch domain-containing protein (301 aa)
           
  0.414
Bra018817
AT1G49900 (E=4e-041) | zinc finger (C2H2 type) family protein (373 aa)
           
  0.414
Bra009629
AT5G01160 (E=1e-146) | e-cadherin binding protein-related (357 aa)
           
  0.414
Bra006845
AT5G56920 (E=1e-056) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cystatin-related, plant (InterPro-IPR006525); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G56910.1); Has 27 Blast hits to 27 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (225 aa)
           
  0.410
Bra006844
AT5G56920 (E=1e-066) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cystatin-related, plant (InterPro-IPR006525); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G56910.1); Has 27 Blast hits to 27 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (230 aa)
           
  0.410
Bra006843
AT5G56920 (E=1e-065) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cystatin-related, plant (InterPro-IPR006525); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G56910.1); Has 27 Blast hits to 27 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (221 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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