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Bra004706 protein (Brassica rapa) - STRING interaction network
"Bra004706" - AT1G54380 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004706AT1G54380 (E=7e-122) | spliceosome protein-related (446 aa)    
Predicted Functional Partners:
Bra034834.1-P
AT3G11500 (E=8e-040) | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (79 aa)
       
    0.933
Bra002044
AT3G11500 (E=4e-039) | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (79 aa)
       
    0.933
Bra032135
AT3G11500 (E=8e-040) | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (80 aa)
       
    0.933
Bra002044.1-P
AT3G11500 (E=4e-039) | small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative (79 aa)
       
    0.933
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
       
  0.738
Bra040018
AT3G07590 (E=8e-047) | small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (112 aa)
       
  0.736
Bra038802
AT4G20440 (E=2e-035) smB | smB (small nuclear ribonucleoprotein associated protein B) (91 aa)
       
  0.736
Bra036157
AT5G48870 (E=9e-041) SAD1 | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1); RNA binding (89 aa)
       
  0.736
Bra030529
AT1G03330 (E=2e-047) | small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative (93 aa)
       
  0.736
Bra029662
AT3G07590 (E=2e-041) | small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (118 aa)
       
  0.736
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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