STRINGSTRING
Bra004708 protein (Brassica rapa) - STRING interaction network
"Bra004708" - AT2G42570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004708AT2G42570 (E=1e-192) | unknown protein (367 aa)    
Predicted Functional Partners:
Bra007184
AT3G55700 (E=9e-205) | UDP-glucoronosyl/UDP-glucosyl transferase family protein (449 aa)
           
  0.499
Bra003220
AT3G55700 (E=5e-199) | UDP-glucoronosyl/UDP-glucosyl transferase family protein (673 aa)
           
  0.499
Bra001401
AT3G11400 (E=5e-142) EIF3G1, ATEIF3G1 | eukaryotic translation initiation factor 3G / eIF3g ; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. This subunit can bind 18S rRNA (294 aa)
           
  0.480
Bra023274
AT1G32530 (E=1e-133) | zinc finger (C3HC4-type RING finger) family protein (687 aa)
           
  0.476
Bra001524
AT3G13860 (E=2e-295) HSP60-3A | HSP60-3A (HEAT SHOCK PROTEIN 60-3A); ATP binding / protein binding (572 aa)
           
  0.455
Bra000654
AT4G08685 (E=1e-080) SAH7 | SAH7 (159 aa)
     
   
  0.442
Bra028221
AT5G39040 (E=6e-304) ATTAP2, TAP2 | ATTAP2; ATPase, coupled to transmembrane movement of substances / transporter (641 aa)
           
  0.412
Bra030052
AT1G27480 (E=4e-203) | lecithin-cholesterol acyltransferase family protein / LACT family protein (430 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]