STRINGSTRING
Bra004722 protein (Brassica rapa) - STRING interaction network
"Bra004722" - AT2G42710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004722AT2G42710 (E=2e-119) | ribosomal protein L1 family protein (388 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra000339
AT2G44060 (E=9e-153) | late embryogenesis abundant family protein / LEA family protein (777 aa)
 
  0.999
Bra023302
AT1G32990 (E=3e-087) PRPL11 | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome (219 aa)
 
  0.999
Bra016581.1-P
AT1G32990 (E=7e-062) PRPL11 | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome (118 aa)
 
  0.999
Bra017714
AT4G35490 (E=4e-072) MRPL11 | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11); structural constituent of ribosome (156 aa)
 
  0.999
Bra017715
AT4G35490 (E=1e-068) MRPL11 | MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11); structural constituent of ribosome (156 aa)
 
  0.999
Bra031109
AT2G20060 (E=1e-135) | ribosomal protein L4 family protein (514 aa)
 
  0.999
Bra040982
ATCG00830 (E=9e-059) RPL2.1 | encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex (165 aa)
 
  0.999
Bra004801
AT2G44065 (E=2e-077) | ribosomal protein L2 family protein (214 aa)
 
  0.999
Bra015131
AT2G04040 (E=8e-223) ATDTX1, TX1 | TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter (761 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]