STRINGSTRING
Bra004723 protein (Brassica rapa) - STRING interaction network
"Bra004723" - AT2G42700 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
Bra004723AT2G42700 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- vesicle-mediated transport, vesicle docking during exocytosis; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Sec1-like protein (InterPro-IPR001619); Has 95 Blast hits to 92 proteins in 33 species- Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (831 aa)    
Predicted Functional Partners:
Bra022921
AT2G32900 (E=8e-202) ATZW10 | ATZW10 (758 aa)
     
 
  0.735
Bra005547
AT2G32900 (E=5e-186) ATZW10 | ATZW10 (753 aa)
     
 
  0.735
Bra018119
AT3G47700 (E=0.0) MAG2 | MAG2 (maigo2) (788 aa)
     
 
  0.698
Bra009753
AT5G24350 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Secretory pathway Sec39 (InterPro-IPR013244); Has 170 Blast hits to 130 proteins in 45 species- Archae - 0; Bacteria - 5; Metazoa - 90; Fungi - 13; Plants - 54; Viruses - 0; Other Eukaryotes - 8 (source- NCBI BLink). (2370 aa)
     
   
  0.611
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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