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Bra004724 protein (Brassica rapa) - STRING interaction network
"Bra004724" - AT2G42690 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004724AT2G42690 (E=3e-081) | lipase, putative (392 aa)    
Predicted Functional Partners:
Bra024062
AT4G30580 (E=6e-152) ATS2, EMB1995 | ATS2; 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase (384 aa)
         
  0.617
Bra039669
AT1G53390 (E=0.0) | ATPase, coupled to transmembrane movement of substances (1131 aa)
           
  0.467
Bra039668
AT1G53390 (E=0.0) | ATPase, coupled to transmembrane movement of substances (1086 aa)
           
  0.467
Bra039378
AT3G13220 (E=0.0) | ABC transporter family protein (681 aa)
           
  0.467
Bra038121
AT1G53390 (E=1e-311) | ATPase, coupled to transmembrane movement of substances (1054 aa)
           
  0.467
Bra035353
AT3G55130 (E=2e-304) ATWBC19 | ATWBC19 (White-Brown Complex homolog 19); ATPase, coupled to transmembrane movement of substances (715 aa)
           
  0.467
Bra034385
AT2G28070 (E=1e-160) | ABC transporter family protein (689 aa)
           
  0.467
Bra033878
AT1G31770 (E=0.0) | ABC transporter family protein (641 aa)
           
  0.467
Bra031249
AT3G21090 (E=0.0) | ABC transporter family protein (691 aa)
           
  0.467
Bra030948
AT1G53270 (E=1e-285) | ABC transporter family protein (588 aa)
           
  0.467
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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