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Bra004737 protein (Brassica rapa) - STRING interaction network
"Bra004737" - AT2G43020 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004737AT2G43020 (E=7e-280) ATPAO2 | ATPAO2 (Polyamine oxidase 2); amine oxidase/ electron carrier/ oxidoreductase (490 aa)    
Predicted Functional Partners:
Bra022631
AT5G53120 (E=2e-184) SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase (355 aa)
         
  0.933
Bra003082
AT5G53120 (E=9e-184) SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase (361 aa)
         
  0.933
Bra011132
AT4G29720 (E=9e-247) ATPAO5 | ATPAO5 (Polyamine oxidase 5); amine oxidase/ electron carrier/ oxidoreductase (541 aa)
   
   
0.930
Bra024137
AT4G29720 (E=3e-222) ATPAO5 | ATPAO5 (Polyamine oxidase 5); amine oxidase/ electron carrier/ oxidoreductase (515 aa)
   
   
0.927
Bra036916
AT4G14940 (E=0.0) ATAO1 | ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1); amine oxidase/ copper ion binding (649 aa)
         
  0.924
Bra006210
AT5G13700 (E=9e-237) ATPAO1, APAO, PAO1 | ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1); FAD binding / polyamine oxidase (471 aa)
   
   
0.923
Bra024620
AT1G70310 (E=8e-158) SPDS2 | SPDS2 (spermidine synthase 2); spermidine synthase (344 aa)
         
  0.901
Bra038432
AT1G31710 (E=4e-296) | copper amine oxidase, putative (556 aa)
         
  0.900
Bra039742
AT1G65840 (E=1e-273) ATPAO4, PAO4 | ATPAO4 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 4); amine oxidase/ polyamine oxidase (497 aa)
   
   
0.899
Bra000260
AT2G42490 (E=0.0) | copper amine oxidase, putative (788 aa)
         
  0.898
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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