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Bra004738 protein (Brassica rapa) - STRING interaction network
"Bra004738" - AT2G43040 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004738AT2G43040 (E=0.0) NPG1 | NPG1 (no pollen germination 1); calmodulin binding (707 aa)    
Predicted Functional Partners:
Bra037762
AT5G64090 (E=5e-141) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Hyccin (InterPro-IPR018619); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G21050.1); Has 266 Blast hits to 191 proteins in 57 species- Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 91 (source- NCBI BLink). (422 aa)
       
      0.613
Bra006592
AT5G21050 (E=1e-102) | LOCATED IN- chloroplast; EXPRESSED IN- 14 plant structures; EXPRESSED DURING- 8 growth stages; CONTAINS InterPro DOMAIN/s- Hyccin (InterPro-IPR018619); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G64090.1); Has 170 Blast hits to 170 proteins in 49 species- Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (342 aa)
       
      0.613
Bra002351
AT5G21050 (E=1e-154) | LOCATED IN- chloroplast; EXPRESSED IN- 14 plant structures; EXPRESSED DURING- 8 growth stages; CONTAINS InterPro DOMAIN/s- Hyccin (InterPro-IPR018619); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G64090.1); Has 170 Blast hits to 170 proteins in 49 species- Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (347 aa)
       
      0.613
Bra040374
AT3G07360 (E=8e-150) PUB9, ATPUB9 | PUB9 (PLANT U-BOX 9) (451 aa)
           
  0.426
Bra029857
AT3G10620 (E=6e-093) ATNUDX26 | ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26); bis(5’-adenosyl)-pentaphosphatase/ bis(5’-nucleosyl)-tetraphosphatase (asymmetrical) (336 aa)
           
  0.426
Bra029642
AT3G07360 (E=5e-212) PUB9, ATPUB9 | PUB9 (PLANT U-BOX 9); ubiquitin-protein ligase (462 aa)
           
  0.426
Bra018023
AT3G48950 (E=5e-236) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (469 aa)
           
  0.426
Bra001247
AT3G07360 (E=9e-219) PUB9, ATPUB9 | PUB9 (PLANT U-BOX 9); ubiquitin-protein ligase (456 aa)
           
  0.426
Bra008811
AT5G13650 (E=0.0) | elongation factor family protein (674 aa)
           
  0.424
Bra014474
AT3G60740 (E=3e-285) TTN1, EMB133, TFC D, CHO | TTN1 (TITAN 1); tubulin binding (1288 aa)
     
   
  0.415
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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