STRINGSTRING
Bra004740 protein (Brassica rapa) - STRING interaction network
"Bra004740" - AT2G43060 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004740AT2G43060 (E=7e-051) | transcription factor (157 aa)    
Predicted Functional Partners:
Bra002778
AT5G56950 (E=4e-141) NFA03, NFA3, NAP1;3 | NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding (415 aa)
       
      0.907
Bra040674
AT2G19480 (E=3e-128) NFA02, NFA2, NAP1;2 | NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding (376 aa)
       
      0.618
Bra036720
AT2G19480 (E=2e-127) NFA02, NFA2, NAP1;2 | NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding (369 aa)
       
      0.618
Bra013951
AT4G26110 (E=2e-132) NAP1;1, ATNAP1;1 | NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding (366 aa)
       
      0.618
Bra031083
AT4G26110 (E=4e-078) NAP1;1, ATNAP1;1 | NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding (379 aa)
       
      0.560
Bra027399
AT3G13782 (E=2e-103) NFA04, NAP1;4, NFA4 | NAP1;4 (NUCLEOSOME ASSEMBLY PROTEIN1;4); DNA binding / chromatin binding (276 aa)
       
      0.560
Bra013736
AT2G19480 (E=8e-017) NFA02, NFA2, NAP1;2 | NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding (208 aa)
       
      0.560
Bra010439
AT1G64280 (E=5e-190) NPR1, SAI1, NIM1, ATNPR1 | NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator (962 aa)
       
      0.560
Bra006957
AT2G19480 (E=1e-079) NFA02, NFA2, NAP1;2 | NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding (227 aa)
       
      0.560
Bra010558
AT4G36540 (E=3e-113) BEE2 | BEE2 (BR Enhanced Expression 2); DNA binding / transcription factor (300 aa)
       
 
  0.524
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]