STRINGSTRING
Bra004759 protein (Brassica rapa) - STRING interaction network
"Bra004759" - AT2G43400 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004759AT2G43400 (E=0.0) ETFQO | ETFQO (electron-transfer flavoprotein-ubiquinone oxidoreductase); catalytic/ electron carrier/ electron-transferring-flavoprotein dehydrogenase (626 aa)    
Predicted Functional Partners:
Bra014258
AT1G50940 (E=2e-160) ETFALPHA | ETFALPHA (electron transfer flavoprotein alpha); FAD binding / electron carrier (354 aa)
 
 
  0.940
Bra027496
AT5G43430 (E=5e-063) ETFBETA | ETFBETA; electron carrier (387 aa)
 
 
  0.939
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
     
 
  0.792
Bra038291
AT3G45300 (E=6e-211) IVD, ATIVD | IVD (ISOVALERYL-COA-DEHYDROGENASE); ATP binding / isovaleryl-CoA dehydrogenase (409 aa)
   
   
  0.697
Bra006878
AT3G51800 (E=2e-173) ATG2 | ATG2; aminopeptidase/ metalloexopeptidase (796 aa)
   
 
  0.676
Bra039216
AT2G23800 (E=8e-157) GGPS2, GGPS5 | GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2); farnesyltranstransferase (341 aa)
     
  0.668
Bra038544
AT2G18640 (E=5e-147) GGPS4 | GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4); farnesyltranstransferase (367 aa)
     
  0.668
Bra035808
AT3G20160 (E=2e-139) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (350 aa)
     
  0.668
Bra035042
AT1G78510 (E=3e-183) SPS1 | SPS1 (solanesyl diphosphate synthase 1); trans-octaprenyltranstransferase (419 aa)
     
  0.668
Bra032140
AT2G23800 (E=5e-158) GGPS2, GGPS5 | GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2); farnesyltranstransferase (468 aa)
     
  0.668
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]