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Bra004767 protein (Brassica rapa) - STRING interaction network
"Bra004767" - AT2G43500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004767AT2G43500 (E=3e-315) | RWP-RK domain-containing protein (826 aa)    
Predicted Functional Partners:
Bra031528
AT1G60070 (E=9e-057) | binding / clathrin binding / protein binding / protein transporter (218 aa)
           
  0.453
Bra024739
AT1G31730 (E=1e-100) | epsilon-adaptin, putative (263 aa)
           
  0.453
Bra024627
AT1G23900 (E=0.0) GAMMA-ADAPTIN 1, Gamma-ADR | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (872 aa)
           
  0.453
Bra023199
AT1G31730 (E=0.0) | epsilon-adaptin, putative (938 aa)
           
  0.453
Bra012393
AT1G23900 (E=0.0) GAMMA-ADAPTIN 1, Gamma-ADR | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (874 aa)
           
  0.453
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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