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Bra004775 protein (Brassica rapa) - STRING interaction network
"Bra004775" - AT2G43640 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004775AT2G43640 (E=5e-046) | signal recognition particle 14 kDa family protein / SRP14 family protein (303 aa)    
Predicted Functional Partners:
Bra032242
AT1G48160 (E=5e-058) | signal recognition particle 19 kDa protein, putative / SRP19, putative (145 aa)
     
  0.986
Bra014104
AT1G48160 (E=4e-054) | signal recognition particle 19 kDa protein, putative / SRP19, putative (146 aa)
     
  0.986
Bra018008
AT3G49100 (E=5e-054) | signal recognition particle 9 kDa protein, putative / SRP9, putative ; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding (103 aa)
     
  0.985
Bra019578
AT3G49100 (E=2e-053) | signal recognition particle 9 kDa protein, putative / SRP9, putative ; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding (103 aa)
     
  0.981
Bra004243
AT1G67650 (E=3e-258) | 7S RNA binding ; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (660 aa)
       
  0.979
Bra004079
AT1G67680 (E=2e-274) | 7S RNA binding ; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (648 aa)
       
  0.979
Bra026145
AT1G48900 (E=3e-226) | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (479 aa)
       
  0.978
Bra018760
AT1G48900 (E=1e-246) | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (495 aa)
       
  0.978
Bra014161
AT1G48900 (E=2e-239) | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (496 aa)
       
  0.978
Bra036933
AT5G61970 (E=2e-024) | signal recognition particle-related / SRP-related (77 aa)
       
  0.976
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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