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Bra004790 protein (Brassica rapa) - STRING interaction network
"Bra004790" - AT2G43880 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004790AT2G43880 (E=1e-176) | polygalacturonase, putative / pectinase, putative (367 aa)    
Predicted Functional Partners:
Bra034140
AT3G10720 (E=6e-297) | pectinesterase, putative (613 aa)
   
 
  0.593
Bra009406
AT5G04970 (E=2e-279) | pectinesterase, putative (640 aa)
   
 
  0.593
Bra005833
AT5G04970 (E=8e-279) | pectinesterase, putative (593 aa)
   
 
  0.593
Bra039419
AT3G05620 (E=3e-267) | pectinesterase family protein (539 aa)
       
  0.583
Bra002257
AT5G19730 (E=2e-204) | pectinesterase family protein (382 aa)
       
  0.581
Bra034139
AT3G10710 (E=2e-268) | pectinesterase family protein (559 aa)
       
  0.580
Bra031204
AT2G21610 (E=9e-161) PE11, ATPE11 | pectinesterase family protein (323 aa)
       
  0.580
Bra020848
AT1G11580 (E=3e-108) ATPMEPCRA, PMEPCRA | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase (339 aa)
       
  0.580
Bra016838
AT1G11590 (E=5e-109) | pectin methylesterase, putative (350 aa)
       
  0.580
Bra005832
AT5G04960 (E=1e-252) | pectinesterase family protein ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (570 aa)
       
  0.580
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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