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Bra004794 protein (Brassica rapa) - STRING interaction network
"Bra004794" - AT2G43945 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004794AT2G43945 (E=1e-107) | unknown protein (284 aa)    
Predicted Functional Partners:
Bra022431
AT3G51820 (E=1e-017) ATG4, G4, CHLG | G4; chlorophyll synthetase (103 aa)
   
          0.515
Bra022431.1-P
AT3G51820 (E=1e-017) ATG4, G4, CHLG | G4; chlorophyll synthetase (103 aa)
   
          0.515
Bra010818
AT1G29700 (E=1e-155) | unknown protein (351 aa)
   
        0.511
Bra036240
AT4G02770 (E=3e-098) PSAD-1 | PSAD-1 (photosystem I subunit D-1) (279 aa)
   
          0.505
Bra006098
AT3G25860 (E=2e-023) LTA2, PLE2 | LTA2; dihydrolipoyllysine-residue acetyltransferase (212 aa)
   
          0.505
Bra001281
AT3G08010 (E=8e-183) ATAB2 | ATAB2; RNA binding (375 aa)
   
        0.504
Bra028920
AT3G02690 (E=6e-023) | integral membrane family protein (103 aa)
   
          0.498
Bra028837
AT5G52970 (E=5e-087) | thylakoid lumen 15.0 kDa protein (224 aa)
   
          0.498
Bra036508
AT3G02690 (E=4e-036) | integral membrane family protein (109 aa)
   
          0.497
Bra019190
AT4G25080 (E=3e-027) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (93 aa)
   
          0.491
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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