STRINGSTRING
Bra004799 protein (Brassica rapa) - STRING interaction network
"Bra004799" - AT2G44010 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004799AT2G44010 (E=2e-028) | unknown protein (94 aa)    
Predicted Functional Partners:
Bra027343
AT3G14380 (E=1e-066) | integral membrane family protein (172 aa)
           
  0.489
Bra027734
AT1G64405 (E=2e-031) | unknown protein (118 aa)
           
  0.475
Bra032154
AT2G23630 (E=1e-288) sks16 | sks16 (SKU5 Similar 16); copper ion binding / pectinesterase (539 aa)
           
  0.455
Bra027701
AT1G64405 (E=2e-026) | unknown protein (113 aa)
           
  0.445
Bra019628
AT2G36640 (E=1e-078) ATECP63 | ATECP63 (EMBRYONIC CELL PROTEIN 63) (451 aa)
           
  0.414
Bra034943
AT1G41830 (E=4e-315) SKS6 | SKS6 (SKU5-SIMILAR 6); pectinesterase (542 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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