STRINGSTRING
Bra004817 protein (Brassica rapa) - STRING interaction network
"Bra004817" - AT2G44230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004817AT2G44230 (E=2e-282) | unknown protein (538 aa)    
Predicted Functional Partners:
Bra007309
AT3G57180 (E=4e-253) | GTP binding (659 aa)
           
  0.541
Bra037924
AT4G10620 (E=1e-266) | INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- GTP binding (TAIR-AT3G57180.1); Has 777 Blast hits to 699 proteins in 334 species- Archae - 15; Bacteria - 397; Metazoa - 157; Fungi - 74; Plants - 61; Viruses - 0; Other Eukaryotes - 73 (source- NCBI BLink). (570 aa)
           
  0.510
Bra011268
AT4G31390 (E=0.0) | ABC1 family protein (600 aa)
           
  0.418
Bra020472
AT5G24810 (E=0.0) | ABC1 family protein (999 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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