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Bra004823 protein (Brassica rapa) - STRING interaction network
"Bra004823" - AT2G44280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004823AT2G44280 (E=2e-244) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Major facilitator superfamily, general substrate transporter (InterPro-IPR016196); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G60070.1); Has 781 Blast hits to 773 proteins in 246 species- Archae - 0; Bacteria - 563; Metazoa - 99; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 82 (source- NCBI BLink). (461 aa)    
Predicted Functional Partners:
Bra014459
AT2G45570 (E=6e-071) CYP76C2 | CYP76C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (453 aa)
         
  0.648
Bra030751
AT1G09010 (E=0.0) | glycoside hydrolase family 2 protein (936 aa)
         
  0.483
Bra018587
AT1G09010 (E=0.0) | glycoside hydrolase family 2 protein (937 aa)
         
  0.483
Bra014816
AT3G54440 (E=0.0) | glycoside hydrolase family 2 protein (1104 aa)
         
  0.483
Bra040277
AT3G06580 (E=1e-263) GAL1, GALK | GALK; ATP binding / galactokinase (496 aa)
         
  0.481
Bra038046
AT4G16130 (E=3e-050) ARA1, ISA1, ATISA1 | ARA1 (ARABINOSE KINASE); ATP binding / L-arabinokinase/ galactokinase (186 aa)
         
  0.481
Bra033531
AT4G16130 (E=0.0) ARA1, ISA1, ATISA1 | ARA1 (ARABINOSE KINASE); ATP binding / L-arabinokinase/ galactokinase (889 aa)
         
  0.481
Bra020699
AT4G16130 (E=2e-035) ARA1, ISA1, ATISA1 | ARA1 (ARABINOSE KINASE); ATP binding / L-arabinokinase/ galactokinase (125 aa)
         
  0.481
Bra014458
AT4G16130 (E=4e-033) ARA1, ISA1, ATISA1 | ARA1 (ARABINOSE KINASE); ATP binding / L-arabinokinase/ galactokinase (125 aa)
         
  0.481
Bra029861
AT3G10700 (E=2e-121) | GHMP kinase family protein (385 aa)
         
  0.481
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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