STRINGSTRING
Bra004828 protein (Brassica rapa) - STRING interaction network
"Bra004828" - AT5G43520 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004828AT5G43520 (E=6e-114) | DC1 domain-containing protein (253 aa)    
Predicted Functional Partners:
Bra029033
AT5G54230 (E=3e-122) MYB49, AtMYB49 | MYB49 (myb domain protein 49); transcription factor (314 aa)
       
      0.489
Bra015777
AT1G76210 (E=1e-095) | unknown protein (224 aa)
       
      0.489
Bra029900
AT3G48510 (E=9e-112) | unknown protein (299 aa)
       
      0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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